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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5081834_5081925_F

Intron Information:

Intron Rank:
142698
Intron Class:
major
Intron Phase:
Intron Coordinates:
5081834 - 5081925
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGACAAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
43
-0.4
1.5
44.8
44.8
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026919
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027734
5080136 - 5081971
1836