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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5081834_5083832_F

Intron Information:

Intron Rank:
142701
Intron Class:
major
Intron Phase:
Intron Coordinates:
5081834 - 5083832
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
74.8
39.7
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026919
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032518
5080136 - 5083926
3791