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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5119819_5147328_F

Intron Information:

Intron Rank:
146922
Intron Class:
major
Intron Phase:
Intron Coordinates:
5119819 - 5147328
Intron Length:
27510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATATTTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.8
0.69
0.8
77.8
31
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
65.2
0.55
1.5
79.15
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029130
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034862
5112827 - 5154839
42013
ENSAPLT00000022461
5112827 - 5155466
42640