Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5119819_5147361_F

Intron Information:

Intron Rank:

146925

Intron Class:

major

Intron Phase:

Intron Coordinates:

5119819 - 5147361

Intron Length:

27543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

ATTCCCTCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

ATTCCCTCACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

1.2

85.2

32.2

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

71.5

0.48

0.9

63.8

37.4

Minor 5ss

-1.8

3.3

49.7

46.6

Minor BPS

57.1

0.22

1.9

71.95

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026896

5116743 - 5154509

37767