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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5172969_5181253_F

Intron Information:

Intron Rank:
141005
Intron Class:
major
Intron Phase:
Intron Coordinates:
5172969 - 5181253
Intron Length:
8285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.7
36.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.6
-1.4
2.9
46.8
35.3
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025944
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037386
5172551 - 5182259
9709