About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5225781_5230066_R

Intron Information:

Intron Rank:
141925
Intron Class:
major
Intron Phase:
Intron Coordinates:
5225781 - 5230066
Intron Length:
4286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTT
5'SS Class:
major
3'SS Sequence:
ACTTGTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAA
U12 Branch Point Sequence:
CTCCCCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
76.6
32.8
Major BPS
52.9
0.07
1.1
59.3
35.9
Major PPT
79.6
0.67
0.9
72.7
37
Minor 5ss
49.3
-0
2.9
73.4
43.4
Minor BPS
63.8
0.51
1.7
78.49
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023677
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035353
5225003 - 5231160
6158