Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5233975_5237062_R

Intron Information:

Intron Rank:

129955

Intron Class:

major

Intron Phase:

Intron Coordinates:

5233975 - 5237062

Intron Length:

3088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAAACTC

5'SS Class:

major

3'SS Sequence:

TGTTTTTATACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTCACTAAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

68.3

36.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.1

0.79

0.9

80.6

36.1

Minor 5ss

30.4

-2.2

3.3

41.7

Minor BPS

53.5

0.09

1.8

67.37

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017109

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022565

5233167 - 5237592

4426

ENSAPLT00000021581

5233167 - 5237406

4240