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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5288491_5294135_R

Intron Information:

Intron Rank:
134608
Intron Class:
major
Intron Phase:
Intron Coordinates:
5288491 - 5294135
Intron Length:
5645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATTTAAC
5'SS Class:
major
3'SS Sequence:
TTTTACTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATGCCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
69.7
34.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.3
0.88
0.7
81.3
36
Minor 5ss
43.9
-0.7
2.5
54.1
37.2
Minor BPS
70.7
0.65
1.4
72.14
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019737
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028725
5287720 - 5295008
7289