Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5289699_5290900_R

Intron Information:

Intron Rank:

134606

Intron Class:

major

Intron Phase:

Intron Coordinates:

5289699 - 5290900

Intron Length:

1202

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCGCT

5'SS Class:

strong_major

3'SS Sequence:

GTGTCTGGTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTCTAG

U12 Branch Point Sequence:

TCTAGCCCAGCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

71.5

38.5

Major BPS

40.1

-0.6

1.6

35.8

41.3

Major PPT

68.3

0.41

1.1

65.4

45.5

Minor 5ss

39.1

-1.2

3.4

53.8

44.4

Minor BPS

40.1

-0.6

2.3

61.83

47.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024428

5287435 - 5290913

3479