About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5335854_5433845_F

Intron Information:

Intron Rank:
125112
Intron Class:
major
Intron Phase:
Intron Coordinates:
5335854 - 5433845
Intron Length:
97992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
CTCTTGCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTTCTGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
66.4
40.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
78.7
0.65
0.8
76.2
32.4
Minor 5ss
33.4
-1.9
3.3
45
43
Minor BPS
67.7
0.53
2
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017380
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045718
5335693 - 5462406
126714