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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5433985_5454310_F

Intron Information:

Intron Rank:
125113
Intron Class:
major
Intron Phase:
Intron Coordinates:
5433985 - 5454310
Intron Length:
20326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAATTTT
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATGAT
U12 Branch Point Sequence:
TCTTCCTTTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
79
30.1
Major BPS
54.3
0.11
1.4
47.7
45.7
Major PPT
83.5
0.75
0.7
76.8
31.9
Minor 5ss
40.2
-1.1
3.1
54.6
45
Minor BPS
46.1
-0.2
3.6
79.54
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017380
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045718
5335693 - 5462406
126714