Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5679223_5680930_F

Intron Information:

Intron Rank:

148778

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5679223 - 5680930

Intron Length:

1708

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTGCGTGTG

5'SS Class:

major

3'SS Sequence:

TTTTCCTGCTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTGATTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.1

0.29

1.1

58.1

40.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

59.2

0.21

1.7

73.2

37.2

Minor 5ss

32.4

-2

3.5

45.2

44.3

Minor BPS

53.8

0.2

1.8

76.23

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030090

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034549

5678137 - 5681707

3571

ENSAPLT00000028535

5678137 - 5681707

3571