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Intron Name: Anas_platyrhynchos_platyrhynchos_21_5735767_5739088_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5735767 - 5739088

Intron Length:

3322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTGCTGTTTGAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGAAT

U12 Branch Point Sequence:

TTACTATGAATC

Flanking Amino Acid:

KDKEKRKEEKFRTTFISFCS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

32.7

Major BPS

66.8

0.42

1.4

75.9

36.3

Major PPT

70.5

0.46

1.1

71.2

38.7

Minor 5ss

35.9

-1.6

3.5

51.5

45.7

Minor BPS

49.4

-0

1.7

62.84

35.9

Associated Gene:

Gene:

TOP1

Ensembl Gene ID:

ENSAPLG00000008429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008851

5735554 - 5759185

23632