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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5749761_5751273_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5749761 - 5751273
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGAG
5'SS Class:
major
3'SS Sequence:
TGGCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TAGTACTTCATC
Flanking Amino Acid:
RKQMSKEEKQKIKEENERLL
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.1
42.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
81
0.7
0.9
72.8
42.2
Minor 5ss
34.2
-1.8
3.6
46.7
48.6
Minor BPS
51.8
0.04
1.9
64.35
41.4

Associated Gene:

Gene:
TOP1
Ensembl Gene ID:
ENSAPLG00000008429
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008851
5735554 - 5759185
23632