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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5751462_5752027_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5751462 - 5752027
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTAACTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTCCTCTTAACT
Flanking Amino Acid:
MPEDIIINCSKDSKIPPPPP
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.9
0.61
0.9
69.8
36.1
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
73.9
0.83
1.2
81.89
39.4

Associated Gene:

Gene:
TOP1
Ensembl Gene ID:
ENSAPLG00000008429
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008851
5735554 - 5759185
23632