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Intron Name: Anas_platyrhynchos_platyrhynchos_21_5753391_5754538_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5753391 - 5754538

Intron Length:

1148

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGCTC

5'SS Class:

major

3'SS Sequence:

GGTGTAAATGTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTAAAT

U12 Branch Point Sequence:

CTTACCTCACTT

Flanking Amino Acid:

RAVALYFIDKLALRAGNEKE

Intron Amino Acid Position:

450

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

70.6

39.9

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

56.8

0.15

1.1

49.3

43.2

Minor 5ss

-1.5

3.5

51.2

39.7

Minor BPS

0.14

1.9

72.72

44.5

Associated Gene:

Gene:

TOP1

Ensembl Gene ID:

ENSAPLG00000008429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008851

5735554 - 5759185

23632