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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5786178_5789326_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5786178 - 5789326
Intron Length:
3149

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAATGAGG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTCGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTCACTGAACT
Flanking Amino Acid:
PTACSGAHQQVDIREIKEIR
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
59.8
44.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.4
0.71
0.8
77.5
31.3
Minor 5ss
21
-3.3
3.7
22.4
37.2
Minor BPS
61.8
0.45
1.7
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028277
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032641
5785982 - 5799182
13201