Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5789480_5789953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5789480 - 5789953

Intron Length:

474

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTGC

5'SS Class:

major

3'SS Sequence:

CTTCTTTCCGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCCCAT

U12 Branch Point Sequence:

TTCCTCCCATTT

Flanking Amino Acid:

EFRLKTLSLQATSEEEVNMW

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

67.2

39.2

Major BPS

59.9

0.25

1.3

70.1

Major PPT

84.3

0.77

0.7

80.2

25.1

Minor 5ss

36.4

-1.5

3.4

50.2

46.4

Minor BPS

42.6

-0.4

61.83

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028277

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032641

5785982 - 5799182

13201