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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5790048_5790319_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5790048 - 5790319
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAGC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
AGAGCCTGACCT
Flanking Amino Acid:
LRAATPLQIERWLRKQFYSL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
83.4
0.75
0.7
80.4
24.9
Minor 5ss
25.8
-2.8
3.2
33.4
42.1
Minor BPS
48.6
-0
1.9
65.16
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028277
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032641
5785982 - 5799182
13201