About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5798081_5798506_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5798081 - 5798506
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGCAC
U12 Branch Point Sequence:
GGCTCCAGTAGT
Flanking Amino Acid:
TIKEHAFVTSDFPVILSIED
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
42
-0.5
1.3
44.4
38.7
Major PPT
79.4
0.66
0.9
73.6
36.9
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
40.3
-0.6
2.2
55.61
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028277
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032641
5785982 - 5799182
13201