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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5798676_5799020_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5798676 - 5799020
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
GGTGCCTTACTC
Flanking Amino Acid:
NQLKRKILIKHKKLAEGSAY
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.6
0.64
0.8
72.5
32.4
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
55.7
0.16
1.8
63.58
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028277
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032641
5785982 - 5799182
13201