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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5803238_5803454_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5803238 - 5803454
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGGTGCTGATGC
Flanking Amino Acid:
IQNVEKQEGGWWRGDYGGKK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80.7
0.69
0.7
72.1
32.5
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
38.8
-0.8
2.2
44.52
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006836
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007250
5803025 - 5809804
6780