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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5803552_5803630_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5803552 - 5803630
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCGCTCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCGGCCTGACCG
Flanking Amino Acid:
SPSSLEPEREQLDENSPLGD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
67.2
0.39
0.9
59.5
36.9
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
44.2
-0.5
1.9
43.2
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006836
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007250
5803025 - 5809804
6780