About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5806245_5807891_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5806245 - 5807891
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCATCGGTAACA
Flanking Amino Acid:
GVEPLSISIEVLGARHLPKN
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
45.6
-0.3
2.6
59.37
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006836
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007250
5803025 - 5809804
6780