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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_584283_586642_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
584283 - 586642
Intron Length:
2360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
AGTTGGTTATTT
Flanking Amino Acid:
RAADDGNERVGYCVEFQLVA
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
83.9
0.76
0.8
77.8
36
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
44.3
-0.3
2.5
66.64
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015778
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016441
579081 - 611507
32427