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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_586722_587660_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
586722 - 587660
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCCG
5'SS Class:
major
3'SS Sequence:
TTGATATATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTCTCTTTGATA
Flanking Amino Acid:
EQGTECKQYLIPALITTGGF
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
60
44.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
72.7
0.51
1
67
43.1
Minor 5ss
35.8
-1.6
2.8
39.4
39.6
Minor BPS
74
0.75
1.1
77.56
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015778
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016441
579081 - 611507
32427