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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_587856_610276_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
587856 - 610276
Intron Length:
22421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTCTTACTC
Flanking Amino Acid:
CLLFPLAEENVMPCVVSQWS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.1
0.72
0.8
73.3
36.5
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
66.4
0.49
1.6
74.33
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015778
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016441
579081 - 611507
32427