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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5948050_5948441_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5948050 - 5948441
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GCAACCTAAATA
Flanking Amino Acid:
DLSAIVEEIEDLVARLDDLG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69
41.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.4
0.75
0.9
84.6
30.4
Minor 5ss
32.4
-2
3.1
40.6
45.3
Minor BPS
51.3
0.04
1.7
57.58
42

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745