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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5948577_5950612_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5948577 - 5950612
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTATC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGGTGCTCATGT
Flanking Amino Acid:
HVGTEPAMKEDQIIQLMNAI
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.3
77.9
36.9
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
41.8
-0.9
2.6
54.4
42.8
Minor BPS
41.9
-0.5
2.3
60.59
48.6

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745