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Intron Name: Anas_platyrhynchos_platyrhynchos_21_5950790_5951188_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5950790 - 5951188

Intron Length:

399

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCCG

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGAAAT

U12 Branch Point Sequence:

TTTCCCAGAAAT

Flanking Amino Acid:

AVSHHQPVLKLQVTNVMSQP

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

75.3

40.8

Major BPS

48.8

-0

1.2

54.6

37.8

Major PPT

85.1

0.79

0.7

81.1

30.9

Minor 5ss

34.5

-1.8

2.8

42.1

44.5

Minor BPS

56.5

0.28

1.9

81.58

38.7

Associated Gene:

Gene:

RPN2

Ensembl Gene ID:

ENSAPLG00000004900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005130

5946885 - 5961629

14745