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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5951308_5951719_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5951308 - 5951719
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
VLQQTPFVLSGDVFELNFMN
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.1
0.97
0.7
88.7
26.7
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745