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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5951826_5954224_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5951826 - 5954224
Intron Length:
2399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
GTCCCAGTAACC
Flanking Amino Acid:
DNRFIANKVELKVKVSTEVG
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
47.3
-0.2
2.2
61.92
42.9

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745