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Intron Name: Anas_platyrhynchos_platyrhynchos_21_5954317_5955158_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5954317 - 5955158

Intron Length:

842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACGA

5'SS Class:

major

3'SS Sequence:

TTTTGTTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

ATCACCTCAGCT

Flanking Amino Acid:

KDQSIAPKTTRVAYPAKAKG

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

Major BPS

79.2

0.73

75.3

39.4

Major PPT

83.2

0.75

0.8

77.1

37.1

Minor 5ss

30.7

-2.2

3.1

39.6

45.7

Minor BPS

52.5

0.16

1.9

71.81

44.6

Associated Gene:

Gene:

RPN2

Ensembl Gene ID:

ENSAPLG00000004900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005130

5946885 - 5961629

14745