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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5955949_5956465_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5955949 - 5956465
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TATTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGTTCATGAAGT
Flanking Amino Acid:
TLENPILWNVADVVIKFPEE
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
51.2
0.12
2
73.82
42.2

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745