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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5957205_5958098_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5957205 - 5958098
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCTTTTTTATTC
Flanking Amino Acid:
LSPLLLLLILWIKIGANISN
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.6
0.73
0.7
81
24.2
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
55.2
0.14
1.5
61.73
38.7

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745