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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5958175_5959068_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5958175 - 5959068
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
STIVFHMGHAAMLGLMYVYW
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
81.4
30.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
37.4
-1.4
3.3
49.4
41.4
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
RPN2
Ensembl Gene ID:
ENSAPLG00000004900
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005130
5946885 - 5961629
14745