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Intron Name: Anas_platyrhynchos_platyrhynchos_21_5959199_5961577_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5959199 - 5961577

Intron Length:

2379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGCCAG

5'SS Class:

major

3'SS Sequence:

CTCCTTTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCTAT

U12 Branch Point Sequence:

CTTCTCTGAACC

Flanking Amino Acid:

NRMLAHKAVKRIAAEQSSRL

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

60.1

46.2

Major BPS

68.8

0.47

1.3

66.7

41.7

Major PPT

77.8

0.63

0.9

75.5

32.9

Minor 5ss

37.7

-1.4

3.1

48.4

47.2

Minor BPS

64.7

0.44

1.5

72.43

38.4

Associated Gene:

Gene:

RPN2

Ensembl Gene ID:

ENSAPLG00000004900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005130

5946885 - 5961629

14745