About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5968895_5969475_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5968895 - 5969475
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCGCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGCAT
U12 Branch Point Sequence:
TACCTCTGAAAC
Flanking Amino Acid:
FLQTIIGKRLRNSEGSPEEG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
70
0.5
1.4
79.6
35.6
Major PPT
72.3
0.5
0.9
65.1
35
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
50.4
-0
1.5
59.19
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004812
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004963
5968324 - 5971230
2907