Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5970008_5970850_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5970008 - 5970850

Intron Length:

843

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATAC

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCCTTTTTATTT

Flanking Amino Acid:

SISSPLYPALRYSPGPVTGK

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.8

81.2

26.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

92.2

0.95

0.7

88.5

28.4

Minor 5ss

38.2

-1.3

3.1

49.9

46.6

Minor BPS

57.4

0.31

1.6

70.13

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004812

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004963

5968324 - 5971230

2907