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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_5999740_6002158_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5999740 - 6002158
Intron Length:
2419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
TTTGGCTTCACA
Flanking Amino Acid:
IVNNTRKVDVREGDWWLAHS
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
67.8
0.44
1
75
30.1
Major PPT
80.1
0.68
0.9
73.4
37
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
54.4
0.13
2.3
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025635
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028267
5998178 - 6003132
4955