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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6006497_6010870_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6006497 - 6010870
Intron Length:
4374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CTGGCCTGACCC
Flanking Amino Acid:
GARSRNRRLPADMEQGQRSL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.2
34.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
77.2
0.61
0.7
68.9
31.5
Minor 5ss
37.5
-1.4
2.7
48.2
40.4
Minor BPS
48.3
-0.1
1.9
58.56
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022853
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034048
6006133 - 6013739
7607