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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6011027_6011535_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6011027 - 6011535
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTGCACTCACCT
Flanking Amino Acid:
VSHLQIEHRRPPLGSISSME
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
74.9
35.3
Major BPS
64.9
0.37
1
67
29.8
Major PPT
81.4
0.71
0.7
76.7
25.3
Minor 5ss
31.3
-2.1
3.2
40.8
38.7
Minor BPS
48.1
-0
2
70.96
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022853
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034048
6006133 - 6013739
7607