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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6031613_6034910_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6031613 - 6034910
Intron Length:
3298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
CACATCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GTGTCTCTGACA
Flanking Amino Acid:
WSSQRCCWVTDQPTRGAAED
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
69.8
0.45
0.9
61.4
34.6
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
57.1
0.22
1.7
67.73
38.7

Associated Gene:

Gene:
PIGT
Ensembl Gene ID:
ENSAPLG00000003899
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029133
6030266 - 6035007
4742