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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6041714_6042096_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6041714 - 6042096
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TCCCCCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGGCACTGACTT
Flanking Amino Acid:
DVEESPLFASLFPSSDGSSY
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
74.7
35.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
77.8
0.62
0.7
68.8
31.6
Minor 5ss
36.1
-1.6
3.5
59
45.5
Minor BPS
44.7
-0.3
1.8
60.27
43

Associated Gene:

Gene:
PIGT
Ensembl Gene ID:
ENSAPLG00000003899
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004012
6030266 - 6047083
16818