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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6042181_6042316_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6042181 - 6042316
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TTTGTCTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
GCTGGCAGGACT
Flanking Amino Acid:
TPDPNHGFYVSPSVLSALVP
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
55.9
0.15
1.2
49
38
Major PPT
79
0.65
0.7
78
30.8
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
40.8
-0.6
2.2
57.45
45.2

Associated Gene:

Gene:
PIGT
Ensembl Gene ID:
ENSAPLG00000003899
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004012
6030266 - 6047083
16818