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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6044036_6044374_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6044036 - 6044374
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGGAA
U12 Branch Point Sequence:
TTTCTCTTCCCC
Flanking Amino Acid:
QAVHIRPICRDASCLAVSWE
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.7
34.4
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
31.4
-2.1
3.2
35.2
41.4
Minor BPS
43.1
-0.5
3.6
71.01
40.5

Associated Gene:

Gene:
PIGT
Ensembl Gene ID:
ENSAPLG00000003899
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004012
6030266 - 6047083
16818