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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6046166_6046881_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6046166 - 6046881
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
ACGCTGCGCGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTGGCCGGCACT
Flanking Amino Acid:
RWDADLRRGAVSHYRLFPKA
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
56.9
0.16
1
49.9
38.7
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
40.6
-0.6
2.5
59.86
49.3

Associated Gene:

Gene:
PIGT
Ensembl Gene ID:
ENSAPLG00000003899
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004012
6030266 - 6047083
16818