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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6048767_6048977_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6048767 - 6048977
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCGAGGCAC
5'SS Class:
major
3'SS Sequence:
GCTCCAGGGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CTTCTCTTACCT
Flanking Amino Acid:
TAPLPKMGKEYASQCPEEIT
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
62.6
39
Major BPS
69.2
0.48
1
61
37.1
Major PPT
51.6
0.04
1.1
46.1
40.5
Minor 5ss
17.7
-3.7
3.8
28.2
36.5
Minor BPS
64.9
0.55
1.7
80.65
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003866
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003955
6048564 - 6050427
1864