About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6073217_6073859_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6073217 - 6073859
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTGTCTTTACTT
Flanking Amino Acid:
MMAFILNALTCALGLLYFIR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.4
0.82
0.8
80.7
30.9
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
62.1
0.46
1.6
74.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018013
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018430
6072976 - 6074226
1251