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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6088356_6092978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6088356 - 6092978
Intron Length:
4623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
CCCCTGTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
TGAGACTTAACA
Flanking Amino Acid:
RQVWCSLAKNVRETETMDAR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
65.2
40.8
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
63.9
0.31
1
66.5
33.3
Minor 5ss
36.7
-1.5
3
47.6
41.5
Minor BPS
63.2
0.41
1.6
70.37
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027519
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039889
6088260 - 6096156
7897